Human MicroRNA target prediction via multi-hypotheses learning

M Mohebbi, L Ding, RL Malmberg… - Journal of Computational …, 2021 - liebertpub.com
… RNAfold prediction for the purpose of microRNA targeting and include information about in
vivo process of microRNA target binding, we tuned RNAfold to predict … of microRNA targeting. …

Machine Learning Based Methods and Best Practices of microRNA-Target Prediction and Validation

N Nath, S Simm - Systems Biology of MicroRNAs in Cancer, 2022 - Springer
… Timeline for ML-based miRNA target prediction tools. The … 2006 to 2020 categorized in
support vector machine (red), random … , miTarget is trained on 398 positive meaningful miRNA–…

[HTML][HTML] TEC-miTarget: enhancing microRNA target prediction based on deep learning of ribonucleic acid sequences

T Yang, Y Wang, Y He - BMC bioinformatics, 2024 - Springer
… In the present study, we introduced a novel miRNA target prediction model called TEC-miTarget,
which leverages the power of the transformer encoder and CNNs. Based on deep …

Beyond Sequence: A Novel Image-Based Model for MicroRNA Target Prediction

M Mohebbi, S Sesser, P Williams, M Wodtke… - SoutheastCon …, 2024 - ieeexplore.ieee.org
… However, the experimental process of finding microRNA targets is costly and time-… of
microRNA target prediction. It creates an image for each pair of microRNA and a target candidate. …

[PDF][PDF] AN EMPIRICAL STUDY ON GENE PREDICTION TECHNIQUES

M Pradhan - academia.edu
MiTarget which is a SVM classifier for miRNA target gene prediction have been introduced
by … [4] represented Bayesian kernel for the Support Vector Machine (SVM) in order to predict

[PDF][PDF] An Optimized Technique for RNA Prediction Based on Neural Network

AA AlZubi, JM Alanazi - Intell. Autom. Soft Comput, 2023 - cdn.techscience.cn
… features of miRNA target genes as input data. However, … the miTarget [5] method and uses
“LLLLLL” interacting miRNA and lncRNA sequences into a single-stranded sequence, using

Machine Learning Strategies in MicroRNA Research: Bridging Genome to Phenome

S Daniel Thomas, K Vijayakumar, L John… - OMICS: A Journal of …, 2024 - liebertpub.com
Predicting human microRNA-disease associations based on support vector machine. Int
J … A Kernel method for microRNA target prediction using sensible data and position-based …

MicroRNA target prediction tools for animals: Where we are at and where we are going to-A systematic review

RMMW Feitosa, P Prieto-Oliveira, H Brentani… - … Biology and Chemistry, 2022 - Elsevier
… In the context of this review, the most used types of models are Support Vector Machines (SVM),
Hidden Markov Models (HMM) and Artificial Neural Networks (ANN). SVMs and ANNs …

Computational resources for analysis of miRNA targetome

A Thakur, S Kamboj, M Kumar - MicroRNA in Human Malignancies, 2022 - Elsevier
… in humans and contains miRNA target genes for 290 annotated intragenic miRNAs. It
analyzes the miRNA target genes predicted by the PicTar (Krek et al., 2005), TargetScan (Friedman…

MicroRNA target prediction and validation

G Thillaiyampalam, AS Cristino - MicroRNA, 2022 - Elsevier
… challenges and limitations in miRNA target predictions and, finally, … Support Vector Machine
(SVM) is the predominant machine learning algorithm used to train miRNA target prediction